The Fourth Mechanism

Earlier this week, I introduced the concept of relictation, the mathematically derived fixation of ancestral variation through population bottlenecks, as a third distinct mechanism of genomic change alongside natural selection and genetic drift. Relictation was proposed to account for patterns of divergence that neither selection nor drift could explain within the available timelines, as demonstrated by the MITTENS accounting framework.

MITTENS performs an all-cause accounting of genomic divergence. It counts every base pair of difference between two complete, gap-free genomes and compares the total against the empirically observed rate at which changes become fixed in real populations. The result, across every great ape species examined, is that the observed divergence considerably exceeds what fixation can produce in the available time, by multiple orders of magnitude.

Relictation offered a partial answer to the observed accounting problem. If speciation events involve small founding populations carrying non-representative samples of ancestral variation, the resulting lineages would show divergence patterns that look like accumulated substitutions but are actually inherited differences, relics of the ancestral population’s diversity, established across the entire species in one stroke by the bottleneck itself. I looked into that by utilizing Unauthorized’s twin 96-core 512GB RAM beasts to analyze all six complete ape genomes provided by the T2T Primate Consortium. Analysis of the fine-grained distribution of substitutions across the human genome now suggests that relictation cannot be the whole story and may not be the only discrete mechanism at work.

The substitution density across the genome is massively overdispersed, more than 80 times more variable than a uniform-rate process predicts. This variation is not random. Dense regions cluster next to other dense regions, forming contiguous blocks of elevated substitution with sharp boundaries in a pattern we call mesas. Within these mesas, the substitutions are disproportionately concentrated on the human lineage. A single mesa on a single chromosome shows an excess of human-lineage substitutions that exceeds both the MITTENS fixation ceiling and the maximum that natural selection can theoretically fix across the entire genome according to Haldane.

These mesa signatures are consistent with relictation. A bottleneck could produce exactly this shape. But the sheer scale and density of the mesas raises an inescapable question: is there too much structured divergence for multiple bottleneck events to credibly account for?

So I am now contemplating whether what the mesas reveal is a fourth mechanism operating alongside relictation, or an alternative third mechanism that produces the same signature through a different cause. I propose the term sigillation for the hypothesis that some of these mesa regions represent deliberate genomic modification: discrete engineering events that wrote contiguous blocks of change into one dominate lineage. Sigillation predicts the same observable shape as relictation, featuring elevated density, sharp boundaries, and lineage asymmetry, but from a fundamentally different cause.

Both hypotheses remain open. And both may be true simultaneously, as some mesas may be bottleneck relics while others are indications of genetic engineering. Distinguishing between them will require significant further research by those with the tools to do so. But what the data establish beyond any dispute is that a) the mesa signature exists, b) that it is the dominant source of genomic divergence between humans and the great apes, and, c) no account of speciation is complete without it.

Sigillation is no more proof of IGM than relictation is. But it may be initial evidence of IGM. I stress that sigillation is not the only possible explanation for the observed anomalies; the evidence also credibly points to far more outlandish hypotheses than mere intelligent engineering being performed on this planet at some point in the past. What we do know is that neither natural selection nor neutral diffusive drift can still be considered viable candidates. And there is no need to take my word for anything with regards to this, all of the data has been provided by the T2T Primate Consortium (Yoo et al. 2025) aligned with Progressive Cactus (Armstrong et al. 2020).

DISCUSS ON SG


Mailvox: Invoking the Triveritas

A reader has a thought about the butterfly collectors like the Evo-Avengers and others who have a difficult time grasping mathematical arguments:

There are three legs to your Triad: Logical validity, Empirical anchoring, and Mathematical Coherence. If the innumerate cannot follow your arguments from mathematical calculations with respect to offshoots of Darwinism like EES, do you suppose the other two legs of the Triad can do the demolition without relying on the mathematical arguments?

For people not swayed by arguments and data, it wouldn’t make a difference but there may be some who would respond better to arguments from the other two perspectives? It might not be worth your time to bother though as you seem to have other constructive projects you’re engaging in when not harvesting credentialed skulls.

Logical validity is the weakest and least rhetorically effective leg. That’s exactly what the ID guys have been doing for decades and it hasn’t gotten them anywhere. Only a small percentage of the population can follow logic, the scope of the logic often isn’t quite as grand as the logician characteristically supposes, and it has no way of checking itself for validity. So long as the major and the minor arguments hold up, the logic is sound; this was always the fundamental problem with logic that science was supposed to solve.

Mathematical coherence is valuable because it provides for a check on the logic. Most, though not all, math is naturally connected to an underlying logic; quantum mechanics is one area where we see the math tends to overshoot the logic and also lack any empirical anchoring. This is why all the brilliant minds at Caltech and MIT have been spinning their wheels and going nowhere for decades, and why the Wistar mathematicians didn’t make a dent on the evolutionary debate despite their mathematics not only holding up, but going virtually uncontested for the last 60 years.

So what’s missing is the empirical anchoring for both. The problem here is that for the most part, we’re relying on scientists who have a poor grasp of both logic and math to interpret the empirical results they are getting, and then permitting a completely ignorant science media to explain everything to the likes of Erika and the Eco-Avengers. So it’s no wonder that they look at Probability Zero with the stunned incomprehension of proto-chimps trying to master the mystery of fire. Just look at the very obvious problems you can see with the two primary papers relating to the human-chimp divergence, starting with Initial sequence of the chimpanzee genome and comparison with the human genome, published in Nature on September 1, 2005.

The Chimpanzee Sequencing and Analysis Consortium reported a difference of 1.06 percent based on the comparison of two partial genomes. But those partial genomes were at least 8.57 percent different based on size alone! So despite all the very real, very serious, very important work being more or less accurately reported by the consortium, it was misleading garbage even for a work in progress.

There is a similar problem with the Yoo et al 2025 study upon which I relied heavily in the second edition of Probability Zero. Yoo reported a total genomic difference of 410 million base pairs. I therefore divided that difference in two, a division for which I have been repeatedly criticized by a number of butterfly collectors who complain, quite correctly, that we don’t know if the difference should be biased more toward the chimp or human side. The fact that this doesn’t matter in the slightest to my mathematical disproof of natural selection never occurs to them, but fine, let’s look into it… at which point we realize that Yoo et al can’t possibly be correct because 7 billion x 0.0857 is not 410,000,000 but 599,900,000. Darwin, we have a problem.

And note that 600M is just the size difference alone, and therefore doesn’t even begin to take into account the original 1.06 percent difference that was focused on areas of alignment between the two genomes.

So you can see that a) there is still work to be done on the actual size of the chimp-human divergence as well as b) why the Triveritas is a useful heuristic even when one isn’t engaged in deep philosophy. For as veriphysics teaches, it is only when the logic, the math, and the empirical evidence all triangulate an answer can one be reasonably confident that the answer is both substantive and correct.

DISCUSS ON SG


The Irrelevance of EES

Hilbert: It’s so funny how both Neo-Darwinists and Creationists react in the same frightened way to EES. They immediately sense that naturalist EES shreds their fairy tales to pieces.

Hilbert: I really opened the can of worms here…. my conclusion: Bill is at least trying to understand EES. He knows it’s the leading theory of evolution. Everybody else here, including Vox (unfortunately), is just a fantasist, believing Jewish “Jesus Christ” fairy tales…

Hilbert: (in response to my assertion “it took me less than 30 seconds to determine EES is irrelevant.”) Tell me you’re a fanatical crank on a religious mission without telling me… I must say, you managed to deceive me for a moment. I told myself, surely he didn’t mean it this way… but then your mask slipped and it became undeniable… Apparently you even believe in the “Jesus Christ” fairytale and didn’t even realize that Jesus was Jewish and Christianity is just a delusional Jewish sect… Tell me about that empirical evidence again… I really should have noticed it earlier…

Hilbert: Damn, you’re really just a crank. I initially believed you were a serious guy trying to debunk Neo-Darwinism (as others already did). Turns out, McCarthy vs Vox was just two cranks battling each other… I said some of your expressions made you sound like a fanatical amateur and fantasist. Because I thought you weren’t one. But as it turns out, you actually are one. I simply didn’t know this. Now you openly acknowledge you’re not a naturalist but a fantasist who totally ignores the actual empirical evidence supporting the “concept of evolution”… Case closed. Sad, but that’s life. Bye.

According to Wikipedia, EES stands for The Extended Evolutionary Synthesis and consists of a set of theoretical concepts argued to be more comprehensive than the earlier modern synthesis of evolutionary biology that took place between 1918 and 1942. The extended evolutionary synthesis was called for in the 1950s by C. H. Waddington, argued for on the basis of punctuated equilibrium by Stephen Jay Gould and Niles Eldredge in the 1980s, and was reconceptualized in 2007 by Massimo Pigliucci and Gerd B. Müller.

It should not be confused with either the ESS or Evolutionary Stable Strategy, of which Richard Dawkins is so enamored and which is Game Theory applied to attempt to explain observed evolutionary behavior, or the Post-Darwinian Polythesis, which is not just an extension of the modern synthesis, which deals solely with adaptive evolution, but rather, a superset that incorporates both natural selection and ESS with Neutral Theory and various other mechanisms, including relictation. ESS is what I have described as an evolutionary epicycle.

The reason that it took me less than 30 seconds to determine that ESS is as irrelevant as most of the Intelligent Design concepts is because all of the ESS arguments are focused on the adaptive space that natural selection can effect, which a) are at most 2 percent of the average genome and b) don’t even begin to address the same fixation problem that eliminates the possibility of natural selection as a significant generative force. This is why the larger part of the science, the philosophy, the theology, and the general discussion of evolution has been an irrelevant waste of time, money, effort, and ink for the last 160 years.

I had already conclusively proven two things:

  • evolution by natural selection is mathematically impossible.
  • evolution by neutral drift is both mathematically and empirically impossible.

But now I have conclusively proven one more thing:

  • natural selection is empirically irrelevant as an evolutionary mechanism.

Because there is one thing game designers have that no scientists do. And that is unlimited 24-7 access to 96 cores with 512GB RAM and a multicore monster GPU with 96GB RAM, as well as the knowledge of how to effectively make use of that kind of computing power. Which is something we’ll be discussing with the people who made it possible on UATV tonight.

DISCUSS ON SG


Not Just the Evo-Avengers

It doesn’t surprise me at all, but some of the Intelligent Design-adjacent crowd is starting to get very butthurt over Probability Zero and my total lack of interest in their pet evolutionary epicyles. They obviously don’t grasp that I’m genuinely not on anyone’s side except that of the truth itself, whatever that happens to be. I have neither interests nor previous commitments to defend; I’m free to go wherever the evidence and my own curiosity takes me.

From the comments of William Dembski’s interview with me:

Hilbert: Great discussion. Great to see Bill raising EES/Third Way. This is the most likely explanation. Vox shouldn’t dismiss it without having studied it. I’m certain the EES community welcomes Vox’s work.

Bill Dembski: Hi Hilbert. Nice to hear from you. I’ve seen an updated edition of Michael Denton’s Evolution: A Theory in Crisis, which should be out this November. In it he has a chapter titled “An Unresolved Crisis,” where he takes on EES/TWE and argues that these have not resolved the crisis, in particular by not explaining the Types and by not explaining the systems that allow the new mechanisms (such as natural genetic engineering) to work in the first place. I’ll be announcing this book on this Substack, so stay tuned!

Vox Day: I’m not dismissing it, I’m totally unfamiliar with it, but I have not seen anything from it on the mathematical side. And if you don’t solve that to correctly account for what is observably there, then you’ve got nothing no matter how sound the logic is. The reason my initial stance is skeptical is because based on the reactions on every side, both positive and negative, no one seems to have put any effort into looking at the relevant math. No matter what your positive theory is, you have to answer for it. I hope the ESS/Third Way people are doing just that.

Hilbert: Hi Bill and Vox, many thanks for your replies. I’d say EES removes and replaces pretty much every pillar of neo-Darwinism: random mutations (unimportant), natural selection (unimportant), central dogma (it’s two-ways). This allows for directed and adaptive evolution, much closer to what Lamarck envisioned. So I’d say the arguments against neo-Darwinism, including the mathemical ones, hardly apply to EES. And unlike neo-Darwinism, it’s an open theory that can easily incorporate new mechanisms of genetic adaptation, even radical ones, once discovered. What EES cannot explain, and doesn’t pretend to explain, is how this amazing genetic/cellular system emerged in the first place. But even Creationists, to the extent they still are Naturalists, probably have to rely on EES to explain evolution. So I’d definitely encourage everybody to study EES papers and books (Bill has clearly already done so), as this seems to be the most promising theory of evolution.

Vox Day: Again, those statements don’t address the primary factor. Unless the model addresses the existing and observable accounting, it is irrelevant. I don’t know how I can explain this any more simply. All of these appeals to logic and possibility are just handwaving. There are real, observable facts that absolutely have to be addressed. If you’re not addressing them, you’re irrelevant. That doesn’t mean EES is wrong. I have no idea. But I will not even have an opinion one way or the other, or waste 30 seconds looking into it, until the relevant calculations, taking into account timescales and reproductive limits, are provided. What I know is natural selection is impossible. Neutral substitution through genetic drift is impossible. Those things are firmly established. Which is why I very much doubt any mechanism will rescue the concept of evolution.

Hilbert: In short, if you want to solve evolution, you absolutely should study EES in depth. Perhaps you fear that it actually might be able to explain evolution? In a naturalist way? Well that is your problem then.

Hilbert: Vox, I have to say, these are poor answers that make you sound like a fanatical amateur, unfortunately. “I have no idea”, “I will not even have an opinion”, “waste 30 seconds looking into it”. This doesn’t sound good, to be honest. The factual points you mention (natural selection, neutral substitution, genetic drift) have basically no relevance when it comes to EES. EES understands that these mechanism, though real, play almost no role in evolution. They rely on much more powerful mechanisms already observed in nature, (some of which mentioned by Bill), and they are open to additional mechanisms yet to be discovered (like hybridization or whatever). If you deny “the concept of evolution”, you’re probably not a naturalist, but a fantasist. Every observation we know confirms evolution did and does take place. Darwinism and Neo-Darwinism simply failed to explain it. And the challenge is not just speed (the point you focus on in your book). This is actually one of the smaller problems. The bigger problem, even if you can explain speed, is solving functionality (we see almost no failures in nature).

Vox Day: Posturing and name-calling hasn’t worked well for the Neo-Darwinians and the Neutral theorists. Unless you’ve actually done the quant work, you will very likely regret drawing my attention to your pet theory. And what is there to fear? I have no dog in this hunt. I don’t care if it’s evolution, God, or aliens.

Hilbert: Vox, at this point I think it’s clear your disingenuous, perhaps even to yourself: “I have no dog in this hunt. I don’t care if it’s evolution, God, or aliens.” You obviously strongly care. You obviously have a dog in this hunt… And you’re the one name-calling people, viciously and repeatedly. I don’t name-call you at all. I just told you that some of your statements make you sound like a fanatical amateur and a fantasist, not a naturalist, unfortunately. That is, it damages your case. If you really try to dismiss “evolution as a concept”, then you’re making the exact same mistake as Dennis McCarthy: conflating evolution and Neo-Darwinism. That’s like claiming fire doesn’t exist because the phlogiston theory didn’t explain it. It’s just stupid. For EES, the quant problem is not an issue in the way it was for Neo-Darwinism. This is because Neo-Darwinism limited evolution to a few trivial mechanisms (like random mutations). And this simply didn’t work out. So Neo-Darwinism failed.

In contrast, EES is open to any naturalist mechanism, and already includes much more powerful and directional mechanisms than the ones Neo-Darwinism allows (Bill mentioned several of them).

“you will very likely regret drawing my attention to your pet theory.”

Again, you’re wrong: it’s not my pet theory, I didn’t contribute anything to it, it’s simply the leading theory of evolution. And again, it’s obvious you do have a dog in this hunt… it’s obvious you try to salvage and protect your own pet theory… So overall a very disappointing performance. It looks like you’re really just a fantasist who happened to notice what was already obvious to many serious biologists: Neo-Darwinism fails to explain evolution, and then you tried to dismiss “evolution as a concept.”

If you don’t study EES, you’ll simply stay irrelevant. But because you can’t attack it with trivial math arguments, you’ll probably not even try to understand it.

Vox Day: Yeah, it took me less than 30 seconds to determine EES is irrelevant. Whether it operates or not, it is still totally irrelevant to the human genome and every other genome. Now stop posturing, shut up, and wait patiently for the nuke to land on your face. The analysis is done. The math is settled. The empirical evidence is conclusive. And just remember, you genuinely said I sounded like “a fanatical amateur and a fantasist”. But you’re right, I’m not a naturalist. I’m just a game designer. But one single game designer can do in a week what 170 years worth of naturalists couldn’t.

DISCUSS ON SG


An Epic Test

I’m not going to say anything more about it at the moment, but we’re currently running an epic data analysis that is going to break new ground and might even reveal a few surprises. Also, today I came up with a new disproof of the Post-Darwinian polythesis that has nothing to do with either MITTENS or Reverse-MITTENS, is very nearly as conclusive as both of them, and is even easier to test empirically.

So, we have achieved triangulation, even as we await Erika and the Evo-Avengers to launch their no-doubt very impressive assault on Probability Zero, MITTENS, and your woefully outnumbered, outcredentialed dark lord.

DISCUSS ON SG



No Reconciliation

I’ll give Day exactly one thing: There is, in fact, no reconciliation between the observant and the deluded. There is no way either us or him will change their mind. He’s just got it bass-ackwards which one is which.

Actually, based on my most recent work, I genuinely believe they will all eventually come around to my way of thinking with regards to evolution and population genetics. Sooner or later, and probably sooner, they will have no choice but to either a) reconcile themselves to the Probability Zero math or b) run off to Las Vegas and pursue a very different career.

In the meantime, I’m sure we’re all breathlessly awaiting the next video from Erika and the Eco-Avengers.

DISCUSS ON SG


The Best They’ve Got II

Yesterday, I posted the first part of my critical review of Jason Rosenhouse’s 2022 book Failures of Mathematical Anti-Evolutionism, published by Cambridge University Press, in which I demonstrated how he badly misrepresented significant elements of the 1966 Wistar Symposium and how he falsely claimed that the biologists there had adequately answered the challenges posed to the Neo-Darwinian Modern Synthesis by the mathematicians.

Rosenhouse also makes three important assertions in a single paragraph on page 124 in Chapter 4: The Legacy of the Wistar Conference, each of which claims that subsequent work has vindicated the biologists and refuted the mathematicians. However, none of them is accompanied by any evidence within the chapter itself.

Assertion 1: “Molecular biology and computer science were both in a very rudimentary state when the conference was held in 1966. Both fields have blossomed spectacularly in the ensuing decades, with results that have not been kind to the perspectives of Eden and Schützenberger. Molecular biologists have learned a lot about the geometrical structure of protein space, and their results make Eden’s simplistic combinatorial calculations look hopelessly naive.”

Rosenhouse provides no citations. He names no studies nor molecular biologists. No results actually described. No quantifications are offered, just a general statement about how subsequent developments “have not been kind”, whatever that is actually supposed to mean. Rosenhouse does not tell the reader what the geometrical structure of protein space actually looks like, whether functional proteins are in fact densely connected by single-step mutations, or what fraction of single-residue changes preserve function in any specific protein family. He simply asserts that the results exist and implies that those results are devastating for the arguments presented by Eden and Schützenberger, then moves on. The reader is expected to take this on faith and, presumably, to wait for all of this to be shown to him in Chapter 6.

This failure to actually support his assertions with any details at all is particularly egregious because either those results exist or they do not. If molecular biologists have demonstrated that functional proteins are densely connected stepping stones in sequence space, that result would have a name, a date, and a journal. Rosenhouse does not provide any of these. The most relevant empirical work, deep mutational scanning studies, actually shows the opposite of what Rosenhouse implies. Single-residue changes to most proteins tend to reduce or destroy function. The fitness landscape is rugged, not smooth. Eden’s 1966 concerns about the rarity of functional proteins in sequence space have been confirmed by subsequent experimental work, not refuted by it.

Assertion 2: “Schützenberger’s arguments about computer simulations have likewise not held up, and computer simulations of the evolutionary process are now commonplace.”

This is a non sequitur disguised as a refutation. The fact that computer simulations of evolution are “commonplace” does not even begin to address Schützenberger’s argument. Schützenberger’s point was not that you cannot simulate selection on a computer. His point was that random typographic changes to a program, changes that are not guided by a fitness function designed by the programmer, do not produce functional programs. The existence of evolutionary algorithms does not refute this, because every evolutionary algorithm ever written has a programmer-designed fitness function that does exactly what Schützenberger said biology lacks: it provides the mapping between typographic changes and functional outcomes. The programmer is the intelligence that Schützenberger said was missing. Dawkins’s WEASEL program is the perfect example: it works because Dawkins specified the target string, the fitness function, and the selection rule. Remove any of these programmer-supplied components and his simulation produces nothing. Rosenhouse does not address this distinction at all. He simply notes that computer simulations exist and treats their existence as a refutation, as if Falcon 3.0 and Spore somehow proved Schützenberger wrong.

Assertion 3: The section heading “The Two Pillars of Mathematical Anti-Evolutionism” and the final section imply that subsequent chapters will deliver the killing blow. The chapter ends by promising that “We will discuss this work in Chapter 6.”

This is the most revealing move. Rosenhouse has spent an entire chapter arguing that the mathematicians at Wistar were wrong and that the biologists successfully answered them. But his own chapter provides no quantitative refutation of any of the three mathematical arguments provided by the biologists at the time or by anyone else since. Eden’s sequence-space calculation stands unchallenged by any number Rosenhouse provides. Ulam’s rate calculation stands unchallenged by any rate Rosenhouse computes. Schützenberger’s formal-language argument stands unchallenged by any mechanism Rosenhouse identifies. After 26 pages of rhetoric, historical misrepresentation, and posturing, the actual mathematical demonstration is deferred to a later chapter the reader has yet to read.

Which is why, in my third and final post on Rosenhouse’s book, we’ll examine whether he delivered on those three promises or not.

DISCUSS ON SG


The Best They’ve Got I

One name that was unfamiliar to me was brought up several times amidst the panoply of purported “criticisms” and “debunkings” of Probability Zero that are presently being flung around by hundreds of evolutionary enthusiasts, very few of whom have actually read the book. That name is Jason Rosenhouse, the author of Failures of Mathematical Anti-Evolutionism, published by Cambridge University Press in 2022.

Anti-scientific misinformation has become a serious problem on many fronts, including vaccinations and climate change. One of these fronts is the persistence of anti-evolutionism, which has recently been given a superficially professional gloss in the form of the intelligent design movement. Far from solely being of interest to researchers in biology, anti-evolutionism must be recognized as part of a broader campaign with a conservative religious and political agenda. Much of the rhetorical effectiveness of anti-evolutionism comes from its reliance on seemingly precise mathematical arguments. This book, the first of its kind to be written by a mathematician, discusses and refutes these arguments. Along the way, it also clarifies common misconceptions about both biology and mathematics. Both lay audiences and professionals will find the book to be accessible and informative.

I read it, of course, in order to see if he had somehow anticipated my own demonstration of the mathematical impossibility of evolution by natural selection, selective sweeps, neutral sweeps, genetic drift, ILS, biased gene conversion, and every other imagined mechanism, but, as it turns out, he hadn’t. Nothing that he addresses in his book has anything whatsoever to do with my own mathematical work on the subject. Rosenhouse’s book has two primary objectives. First and foremost, he was attempting to defuse the anti-evolutionary work of the Intelligent Design community, beginning with Michael Behe and William Dembski. Since I’m not familiar with their work and since their work does not overlap with mine, I’ll leave it to the latter to address Mr. Rosenhouse’s critique.

Rosenhouse’s book is objectively bad. It purports to be a critique of mathematics as used by ID proponents and of my mathematical work in particular. Yet it betrays a lack of comprehension throughout. It makes a virtue of misrepresentation.

I’m not in a position to have an opinion one way or the other. However, what I can say is that Dembke’s summary is consistent with the parts of the book that addressed something I do know, and which concern Rosenhouse’s attempt to mitigate the serious damage to the mathematical credibility of evolutionary theory that resulted from the 1966 Wistar Symposium, which I have read and to which I devoted an entire chapter of PZ. To put it charitably, Rosenhouse systematically misrepresents the entire debate between the mathematicians and the biologists, and falsely claims that the mathematical issues raised by the mathematicians there were successfully addressed by the biologists present.

His account of Wistar is simply not accurate. It is a systematic misrepresentation of the transcript of the Symposium in three different ways: factual errors, strategic omissions, and interpretive falsehoods and distortions. Here is a systematic analysis of Rosenhouse’s description of the symposium:

Factual Errors

  1. “Only two posed challenges to evolution’s fundamental soundness.”
    Rosenhouse claims only Eden and Schützenberger challenged evolution, and that Ulam “was not challenging the fundamental soundness of the theory.” This is flatly contradicted by the transcript. Ulam explicitly states: “What I am going to do will come to Eden’s conclusions.” He also says, in the discussion, “In contrast to the tone of the discussion I took, personally, I believe that the numbers I took are very optimistic”—meaning he believes the real situation for neo-Darwinism is worse than his model suggests, not that he was merely sketching a neutral mathematical exercise. Rosenhouse’s selective quotation of Ulam’s modest throat-clearing about “schematic thinking” and “a starting point for discussion” is a textbook example of mistaking courtesy for agnosticism. Ulam was just being polite. He was not even remotely neutral on the fundamental soundness of evolution.
  2. “Schützenberger’s presentation is muddled.”
    The transcript appears muddled because it was OCR’d and the scanning was very bad. Schützenberger’s argument is perfectly clear: he introduced three topological spaces, argued that the mapping between the first and second is the unsolved problem, and concluded that “there is a considerable gap in the neo-Darwinian theory of evolution, and we believe that this gap cannot be bridged within the current conception of biology.” Rosenhouse treats the garbled OCR as evidence of confused thinking. This is either dishonest or lazy. He could have checked a physical copy of the proceedings like I did.
  3. The attribution of the “stepping-stone” argument to the biologists.
    Rosenhouse constructs an elaborate analogy involving truffle hogs, river crossings, stepping stones and presents it as though it captures what the biologists actually said at Wistar. It does not. No biologist at the conference presented a stepping-stone model of protein evolution. No biologist calculated the density of functional proteins in the neighborhood of any existing protein. No biologist demonstrated that the local search space is sufficiently dense to support the model. Rosenhouse invented the analogy in 2022 and projected it backward onto a 1966 transcript where it does not appear. This is the classic Fictional Defender move we’ve seen from both the Neo-Darwinists and the Neo-Kantians: constructing a more defensible version of the position than any past figure ever actually articulated, then declaring that this post-facto invented defense answers the challenge to the original’s case.
  4. Ulam’s quote about Eden is misrepresented.
    Rosenhouse quotes Ulam saying that Eden’s comments “refer to a random construction of such molecules and even those of us who are in the majority here, the non-mathematicians, realize that this is not the problem at all.” He uses this to claim Ulam was criticizing Eden. But the transcript shows Ulam was agreeing with Eden’s broader point while noting that the first five minutes of Eden’s talk addressed a preliminary issue that was not the central problem. Ulam immediately goes on to develop his own argument about rates that reaches the same conclusion Eden reached. Rosenhouse presents Ulam as an ally of the biologists. The transcript shows him as an ally of Eden.

Strategic Omissions

  1. Wald’s complete irrelevance is never acknowledged.
    Rosenhouse does not mention that George Wald’s formal presentation on “The Problems of Vicarious Selection” had absolutely nothing to do with the mathematical challenges. Wald talked about luminescent bacteria on deep-sea fish and the mating habits of eels and lampreys. This was one of the “formidable talents” assembled to respond to the mathematicians, and his response was to give a paper on an entirely different subject. Rosenhouse presents the biologists as having answered the challenges effectively. He omits the fact that one of his star witnesses didn’t even show up to the fight.
  2. Lewontin’s admission is buried.
    Rosenhouse quotes Lewontin’s point about enzyme changes as though it settles the matter. He does not mention Lewontin’s admission, under direct questioning from Schützenberger, that he cannot justify the continuity assumption that small genetic changes typically produce small phenotypic changes. The transcript records Lewontin saying, “That is a very good question. I don’t know.” This is the single most important exchange in the entire symposium, because the continuity assumption is what makes hill-climbing selection work. Without it, the entire stepping-stone model that Rosenhouse constructed collapses. He omits it entirely. I, of course, specifically cited it in Probability Zero.
  3. Wald’s observation that supported Eden is omitted.
    Wald stated that he was “hard put to find a single instance” where a single amino acid change in hemoglobin did not “change markedly the properties.” This is relevant to Eden’s argument about the ruggedness of the fitness landscape—if nearly every single-residue change has significant functional consequences, then the space is rugged, not smooth, and local search is unreliable. Rosenhouse omits this because it directly contradicts his stepping-stone narrative.
  4. Crosby’s support for the mathematicians is left out.
    Rosenhouse quotes Crosby’s exasperated comment about “gorgeous unreality” as though it refutes the mathematicians. He does not mention that in the discussion of Eden’s paper, Crosby actually supported Eden’s argument, noting that each intermediate stage “has got to be capable of existing viably” and that frame-shift mutations “decrease enormously the possibility of intermediate stages being viable.” Crosby was frustrated with what he felt were oversimplifications in Ulam’s model; he was not dismissing the mathematical challenge as a whole.
  5. No biologist produced a single calculation.
    This is the single most important omission in the entire chapter. Rosenhouse never acknowledges that not one biologist at the conference produced a single calculation that contradicted the mathematicians’ conclusions, because acknowledging it would destroy his thesis. Eden calculated the size of sequence space. No one calculated a smaller space. Ulam calculated a rate. No one calculated a faster rate. Schützenberger asked for a mechanism. No one demonstrated one. The biologists asserted, objected, analogized, and hand-waved. They did not even attempt to do the math. Rosenhouse’s entire chapter is structured to conceal this fact.

Falsehoods and Distortions

  1. The Kansas/New Jersey analogy is backwards.
    Rosenhouse argues that Schützenberger’s computer-program analogy fails because computer languages are like Kansas (words widely scattered) while the genetic code is like New Jersey (words densely packed). His evidence is that there are 64 codons and all of them code for something. This is true at the codon level, but it is irrelevant to Schützenberger’s argument, which was about proteins, not codons. Every codon codes for an amino acid or a stop, but that does not mean every protein is functional. The question is not whether every three-letter word in the genetic language means something, but whether every 250-letter sentence is grammatical. The answer is overwhelmingly no. Eden had already shown this: the space of 250-residue proteins is ~10^325, and the number of functional proteins that have ever existed is ~10^52. Rosenhouse attacked a strawman of his own construction, refuted an argument Schützenberger was not making, and claimed to have refuted Schützenberger.
  2. Waddington’s summary is presented as authoritative.
    Rosenhouse quotes Waddington’s summary as “exactly right” and as proof that the biologists won the argument. But Waddington’s summary is a diplomatic statement of the biologists’ position, not a demonstration that the position is correct. Waddington asserts that “the meaningful section” of explored sequence space “is quite large in comparison with all the things that could conceivably be made out of it in single steps.” This is an empirical claim. He provides no data to support it. He provides no calculation. He simply asserts it. Rosenhouse treats this assertion as though it were a proof. It is not. It is the claim that required proving, and no one at Wistar even tried to prove it.
  3. Mayr’s “adjust the figures” quote is reinterpreted in a false context.
    Rosenhouse devotes enormous effort to providing context for Mayr’s statement that “somehow or other by adjusting these figures we will come out all right.” He tries to claim that Mayr was making the sophisticated point that Ulam’s model was too simple to be useful. But the transcript shows Mayr was simply retreating to the argument from existence. “We are comforted by knowing that evolution has occurred” is not a mathematical rebuttal. It is not even a scientific argument. It is a profession of blind faith. Mayr was asserting that the numbers must work out because the conclusion is already known. It was nothing more than an appeal to hope in help that would never arrive.
  4. The “biologists were right” framing is unsupported by the transcript.
    Rosenhouse attempts to paint the picture that the biologists successfully answered the mathematicians at Wistarr. The transcript proves the opposite. The biologists offered qualitative objections (things are more complicated than your model), anecdotal counterexamples (hemoglobin variants survive single changes), conceptual reframings (you’re modeling it wrong), and existential assertions (evolution happened, so the math must work). None of these constitute a quantitative refutation. None of them even began to solve the problems the mathematicians identified. And the mathematicians themselves did not accept the biologists’ responses as adequate, and the closing remarks by the host of the symposium made it clear that he did not believe the biologists’ collective response was adequate or that the situation had been resolved.

In my second post on Failures of Mathematical Anti-Evolutionism later this week, I’ll review whether Jason Rosenhouse provided any evidence of his claim in the book that the Wistar mathematicians’ various anti-evolutionary arguments were successfully refuted during the sixty years since the end of the Symposium or not.

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Erika Needs Help

Fair enough. She’s going to need all the help that she can get. But I really fail to see what difference it’s going to make, no matter how many butterfly collectors she assembles.

GIVE ME YOUR OPINIONS ON VOX DAY’S WORK TO APPEAR IN AN UPCOMING VIDEO:

Hey guys (and Mr. Theodore Beale)

As I compose a video on the work of Creationist/Bad Guy Vox Day (Theodore Beale) I have been paying close attention to his blog. You will be pleased to know he has posted an update to his evolution-defeater: Mittens 3.0 (for real this time).

Additionally this man has been crashing out and obsessively making blog posts responding to Youtube comments (instead of just responding to the comments). For this morning’s post we see this charming line regarding friends of the channel Grayson and Creation Myths:

“It should be amusing to catalog all of the various things this slur is going to get wrong in his desperate attempt to prove that math which has been confirmed by every major AI system and more than 10 math PhDs is “stupid”.”

Setting aside the AI stuff, wow 10 math phds! Now I am only aware of three people with doctorates who have “vetted” Day’s work, and they are all associates of the Discovery Institute, but I thought this might be a fun opportunity.

Many of you are highly credentialed and have atomized various portions of Day’s anti-evolution “model” here and elsewhere. I thought it might be fun to compile a list to act as both a resource for why this clown is wrong and as a fun dig in an upcoming video of mine.

Here’s the activity:

If you have a bachelors, masters, or doctorate and have reviewed any of Day’s work please leave a comment outlining your favorite blunder and your credentials.

It does not have to be limited to Mittens 3.0 because Probability Zero (which contains all prior errors) is still for sale and therefore is a part of the public record until Day issues a formal retraction.

This list will appear in an upcoming video of mine so please keep that in mind before commenting! I’m hoping to have a nice count of “credentialed people who think Day’s math (+ assumptions which go into it) is steaming hot garbage”.

Additional acknowledgements:

  • No Day is not worth any of our time but since his work was broadcast to my audience I have a responsibility to provide a detailed counter.
  • Yes Day is a dweeb

This is fascinating. The more credentials, the merrier, I always say. So. Many. Skulls!

Are you not entertained!

I am, of course, deeply intimidated by this formidable army of credentialed academics being arrayed against me. I feel like Sauron in Mordor, alone and surrounded by implacable foes.

Is this how it always ends for dark lords?

Will there never be a happy ending?

UPDATE: Let them do their thing and take their best shot. Don’t correct them. Don’t argue with them. Don’t engage with them at all. Let’s see what they can do with what they’ve got. After they drop the Team Evolution video, that will be the time to have some fun.

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