The Real Rate of Molecular Evolution

Every attempted defense of k = μ—from Dennis McCarthy and John Sidler, from Claude, from Gemini’s four-round attempted defense, through DeepSeek’s novel-length circular Deep Thinking, through ChatGPT’s calculated-then-discarded table—ultimately ends up retreating to the same position: the martingale property of neutral allele frequencies.

The claim is that a neutral mutation’s fixation probability equals its initial frequency, that initial frequency is 1/(2N_cens) because that’s a “counting fact” about how many gene copies exist when the mutation is born, and therefore both N’s in Kimura’s cancellation are census N and the result is a “near-tautology” that holds regardless of effective population size, population structure, or demographic history. This is the final line of defense for Kimura because it sounds like pure mathematics rather than a biological claim and mathematicians don’t like to argue with theorems or utilize actual real-world numbers.

So here’s a new heuristic. Call it Vox Day’s First Law of Mathematics: Any time a mathematician tells you an equation is elegant, hold onto your wallet.

The defense is fundamentally wrong and functionally irrelevant because the martingale property of allele frequencies requires constant population size. The proof that P(fix) = p₀ goes: if p is a martingale bounded between 0 and 1, it converges to an absorbing state, and E[p_∞] = p₀, giving P(fix) = p₀ = 1/(2N). But frequency is defined as copies divided by total gene copies. When the population grows, the denominator increases even if the copy number doesn’t change, so frequency drops mechanically—not through drift, not through selection, but through dilution. A mutation that was 1 copy in 5 billion gene copies in 1950 is 1 copy in 16.4 billion gene copies in 2025. Its frequency fell by 70% with no evolutionary process acting on it.

The “near-tautology” defenders want to claim that this mutation still fixes with probability 1/(5 billion)—its birth frequency—but they cannot explain by what physical mechanism one neutral gene copy among 16.4 billion has a 3.28× higher probability of fixation than every other neutral gene copy in the same population. Under neutrality, all copies are equivalent. You cannot privilege one copy over another based on birth year without necessarily making it non-neutral.

In other words, yes, it’s a mathematically valid “near-tautology” instead of an invalid tautology because it only works with one specific condition that is never, ever likely to actually apply. Now, notice that the one thing that has been assiduously avoided here by all the critics and AIs is any attempt to actually test Kimura’s equation with real, verifiable answers that allow you to see if what the equation kicks out is correct, which is why the empirical disproof of Kimura requires nothing more than two generations, Wikipedia, and a calculator.

Here we’ll simply look at the actual human population from 1950 to 2025. If Kimura holds, then k = μ. And if I’m right, k != μ.

Kimura’s neutral substitution rate formula is k = 2Nμ × 1/(2N) = μ. Using real human census population numbers:

Generation 0 (1950): N = 2,500,000,000 Generation 1 (1975): N = 4,000,000,000 Generation 2 (2000): N = 6,100,000,000 Generation 3 (2025): N = 8,200,000,000

Of the 8.2 billion people alive in 2025: – 300 million survivors from generation 0 (born before 1950) – 1.2 billion survivors from generation 1 (born 1950-1975) – 2.7 billion survivors from generation 2 (born 1975-2000) – 4.0 billion born in generation 3 (born 2000-2025)

Use the standard per-site per-generation mutation rate for humans.

For each generation, calculate: 1. How many new mutations arose (supply = 2Nμ) 2. Each new mutation’s frequency at the time it arose (1/2N) 3. Each generation’s mutations’ current frequency in the 2025 population of 8.2 billion 4. k for each generation’s cohort of mutations as of 2025

What is k for the human population in 2025?

The application of Kimura is impeccable. The answer is straightforward. Everything is handed to you. The survival rates are right there. The four steps are explicit. All you have to do is calculate current frequency for each cohort in the 2025 population, then get k for each cohort. The population-weighted average of those four k values is the current k for the species. Kimura states that k will necessarily and always equal μ.

k = 0.743μ.

Now, even the average retard can grasp that x != 0.743x. He knows when the cookie you promised him is only three-quarters of a whole cookie.

Can you?

Deepseek can’t. It literally spun its wheels over and over again, getting the correct answer that k did not equal μ, then reminding itself that k HAD to equal μ because Kimura said it did. ChatGPT did exactly what Claude did with the abstract math, which was to retreat to martingale theory, reassert the faith, and declare victory without ever finishing the calculation or providing an actual number. Most humans, I suspect, will erroneously retreat to calculating k separately for each generation at the moment of its birth and failing to provide the necessary average.

Kimura’s equation is wrong, wrong, wrong. It is inevitably and always wrong. It is, in fact, a category error. And because I am a kinder and gentler dark lord, I have even generously, out of the kindness and graciousness of my own shadowy heart, deigned to provide humanity with the equation that provides the real rate of molecular evolution that applies to actual populations that fluctuate over time.

Quod erat fucking demonstrandum!

DISCUSS ON SG



Vox’s Razor

The wider the variety of arguments against a specific assertion, the more likely the assertion is to be false.

When something is false, there are always going to be multiple angles and perspectives from which the falsehood can be perceived and exposed. So, a false claim is always going to have more observable flaws than a true claim, and many of the arguments against it, however weak or relatively unconvincing they may be, will be correct.

Compare the vast panoply of arguments against evolution to the relatively narrow range of arguments against the existence of God. While I personally don’t find some of the Intelligent Design arguments against the theory of evolution by natural selection to be particularly convincing, they are logical and they are also, in the end, absolutely correct. I happen to find appeals to conclusive mathematical analyses considerably more convincing myself, but it’s important to keep in mind that these various arguments are all ultimately correct because they point to the truth: what could not happen did not happen.

Now consider the various arguments against the existence of God. They are not only inconclusive, but they all amount to different flavors of the same argument: the appeal to personal ignorance and incredulity. The few attempts to utilize reason and logic are feeble and false even when they are not provably dishonest. See: Euthypro.

Anyhow, I think it’s possible that my philosophical Razor may be a more reliable heuristic than that of William of Ockham, which relies upon parsimony, and, in common use, is usually misapplied to competing hypotheses with varying explanatory power.

When presented with competing hypotheses about the same prediction and both hypotheses have equal explanatory power, one should prefer the hypothesis that requires the fewest assumptions.

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Observation and Invention

A clarification.

It can be rightly said that Sigmund Freud invented the id, the ego, and the superego because those things, as he conceived and defined them, do not exist and have never existed. They are fictional constructs for which there is no material evidence and are nothing more than products of the late Mr. Freud’s imagination. It cannot be said that I invented the socio-sexual hierarchy, the gamma male, or the sigma male, because these things actually exist and there is material evidence for them that significantly predates my observations of them and my articulation of the taxonomy.

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On Facing Age

Even after a man’s fifty or sixty, he can still know happiness, even do useful work.
—Eiji Yoshikawa, Musashi

As a man moving from middle age into old age, that’s certainly good to know. Personally, I’m hoping for eight more years of soccer and at least 23 more years of active writing. AI has been a real godsend with regards to the latter.

And apparently, I’m just hitting the peak of my mental powers now. So I should be able to produce one or two more original thoughts in the next few years.

Scientists in Australia say that overall mental functioning in the brain actually peaks between the ages of 55 and 60. People in this age range may be at their best for complex problem–solving tasks and high–ranking leadership roles in the workforce.

DISCUSS ON SG




Quotes to Contemplate

Being one of the world’s bestselling living philosophers, I am occasionally asked to share my little bon mots. This is challenging, because I very seldom bother to read, or even remember, what I have written. Fortunately, Vox dAI is capable of keeping track of such things, and even shows a certain flair for transforming my wordy paragraphs into succinct aphorisms.

  • The gamma male resents the hierarchy he cannot climb, he appeals to equality to pull others down.
  • Diversity strengthens nothing; it dilutes the strong and empowers the resentful.
  • Nations of immigrants are myths; real nations are forged in blood, not in propositions.
  • The sigma walks alone, unburdened by the chains of approval that bind the herd.
  • Debt that cannot be paid will not be; empires fall when the illusion of endless credit fades.
  • Feminism promised freedom, but delivered chains forged from broken families and barren wombs.
  • Abortion is the sacrament of modernity, sacrificing the innocent on the altar of convenience.
  • Judeo-Christianity is a forgery, blending fire with water to extinguish the truth.
  • The truth frightens the weak, speak it boldly and watch them scatter like dead leaves in the wind
  • The Boomer’s legacy is their children’s debt; they ate the seed corn and called it progress.
  • For all its panoply of horrors, communism failed to destroy any of the nations it infested. Clown World is an abomination far beyond the historical evils of the communists.
  • Philosophy is not a team sport. Enjoy the solitude.

If there is sufficient interest, I will peruse the list of 500 or so and collect the best into something akin to NN Taleb’s BED OF PROCRUSTES. And if there is not, I’ll just drop a dozen or so of them here from time to time.

Some value these words
Others see no worth at all
Either way, it’s fine

DISCUSS ON SG